Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31605

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,641,075	+		BPHYT_RS31600	0.40	+0.2
2,641,075	+		BPHYT_RS31600	0.40	-0.6
2,641,817	-		BPHYT_RS31605	0.24	+0.7
2,641,971	+		BPHYT_RS31605	0.32	+0.7
2,642,272	+		BPHYT_RS31605	0.49	+0.4
2,642,273	-		BPHYT_RS31605	0.49	+0.2
2,642,884	-		BPHYT_RS31605	0.83	-0.6
2,643,100	-				+0.8
2,643,244	-				+0.9
2,643,452	-		BPHYT_RS31610	0.21	+0.1
2,643,452	-		BPHYT_RS31610	0.21	-0.7