Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31290

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,577,814	+		BPHYT_RS31285	0.17	+0.5
2,577,815	-		BPHYT_RS31285	0.17	-1.0
2,577,838	+				+0.9
2,578,046	-		BPHYT_RS31285	0.44	-1.2
2,578,046	-		BPHYT_RS31285	0.44	-0.6
2,578,592	-				-0.8
2,578,938	-		BPHYT_RS31290	0.15	-1.8
2,579,891	-		BPHYT_RS31290	0.86	-0.3
2,580,139	-				+0.6
2,580,451	+		BPHYT_RS31295	0.57	+0.2
2,580,451	+		BPHYT_RS31295	0.57	-1.4
2,580,452	-		BPHYT_RS31295	0.57	-0.1
2,580,452	-		BPHYT_RS31295	0.57	+0.4
2,580,629	-		BPHYT_RS31295	0.84	+1.3
2,580,629	-		BPHYT_RS31295	0.84	-0.0
2,580,700	-				+0.5
2,580,815	+				+0.4
2,580,815	+				+1.7
2,580,933	-				-1.4