Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31275

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,573,788	+		BPHYT_RS31270	0.56	-0.6
2,573,788	+		BPHYT_RS31270	0.56	-1.2
2,573,792	+		BPHYT_RS31270	0.56	-0.3
2,573,971	-		BPHYT_RS31270	0.71	+0.5
2,574,287	+				-1.6
2,574,323	-				+1.1
2,574,323	-				-0.3
2,574,367	-				-0.3
2,574,371	-				+0.4
2,574,437	+				+2.3
2,574,486	-				-0.1
2,574,575	+				+0.7
2,574,576	-				+0.4
2,574,576	-				+0.8
2,574,753	+		BPHYT_RS31275	0.17	-0.4
2,574,753	+		BPHYT_RS31275	0.17	+1.9
2,574,754	-		BPHYT_RS31275	0.17	+0.4
2,574,953	-		BPHYT_RS31275	0.29	+0.7
2,575,052	+		BPHYT_RS31275	0.35	+1.2
2,575,094	+		BPHYT_RS31275	0.38	+3.8
2,575,141	-		BPHYT_RS31275	0.41	+0.3
2,575,658	-		BPHYT_RS31275	0.72	+0.6
2,575,658	-		BPHYT_RS31275	0.72	+0.5
2,576,050	-				-0.2
2,576,080	-				-0.4
2,576,110	-				-2.3
2,576,166	+				+0.9
2,576,478	+		BPHYT_RS31280	0.21	-0.1
2,576,495	-		BPHYT_RS31280	0.23	+0.3
2,576,637	+		BPHYT_RS31280	0.34	+0.5
2,576,638	-		BPHYT_RS31280	0.34	+2.7
2,576,674	+		BPHYT_RS31280	0.37	+0.4
2,576,789	-		BPHYT_RS31280	0.46	-0.9
2,576,789	-		BPHYT_RS31280	0.46	+0.3
2,576,820	+		BPHYT_RS31280	0.48	-0.0