Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31175

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,551,537	-		BPHYT_RS31170	0.54	+2.7
2,551,625	-		BPHYT_RS31170	0.59	+0.6
2,551,762	+		BPHYT_RS31170	0.67	-1.7
2,551,763	-		BPHYT_RS31170	0.67	+1.6
2,551,770	+		BPHYT_RS31170	0.67	-0.7
2,552,057	-		BPHYT_RS31170	0.83	+0.4
2,552,453	+				+0.1
2,552,453	+				+1.2
2,552,454	-				+0.2
2,552,454	-				+0.2
2,552,713	+		BPHYT_RS31175	0.16	+0.5
2,552,871	+		BPHYT_RS31175	0.28	-0.1
2,552,872	-		BPHYT_RS31175	0.28	+0.0
2,552,982	-		BPHYT_RS31175	0.37	+1.3
2,552,982	-		BPHYT_RS31175	0.37	-0.0
2,552,982	-		BPHYT_RS31175	0.37	-0.1
2,553,010	+		BPHYT_RS31175	0.39	-2.3
2,553,010	+		BPHYT_RS31175	0.39	-2.3
2,553,011	-		BPHYT_RS31175	0.39	+0.2
2,553,055	+		BPHYT_RS31175	0.43	-0.3
2,553,055	+		BPHYT_RS31175	0.43	-1.5
2,554,142	-				+0.3
2,554,157	-				-1.0
2,554,194	-				+1.5
2,554,198	+				+1.8
2,554,198	+				-0.1
2,554,199	-				-0.3
2,554,390	+		BPHYT_RS31185	0.11	-1.9
2,554,390	+		BPHYT_RS31185	0.11	+0.0
2,554,687	+		BPHYT_RS31185	0.44	-0.3