Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31165

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,547,180	-				+0.2
2,547,396	+		BPHYT_RS31160	0.21	-1.0
2,547,724	-		BPHYT_RS31160	0.67	-0.3
2,547,749	-		BPHYT_RS31160	0.70	+0.4
2,547,876	+		BPHYT_RS31160	0.88	+0.6
2,548,426	-		BPHYT_RS31165	0.26	+1.1
2,548,498	-		BPHYT_RS31165	0.32	+6.5
2,548,587	-		BPHYT_RS31165	0.39	+0.3
2,548,619	+		BPHYT_RS31165	0.42	-0.9
2,548,620	-		BPHYT_RS31165	0.42	-0.4
2,548,660	-		BPHYT_RS31165	0.45	-0.1
2,548,660	-		BPHYT_RS31165	0.45	-0.5
2,548,749	-		BPHYT_RS31165	0.53	+1.2
2,548,799	+		BPHYT_RS31165	0.57	+0.3
2,548,812	+		BPHYT_RS31165	0.58	+0.8
2,548,813	-		BPHYT_RS31165	0.58	-1.8
2,549,299	-				+0.2
2,549,304	+				+0.8
2,549,327	-				+1.9
2,549,611	-				-0.0
2,549,691	-				-0.1
2,550,196	-				+1.1