Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30955

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,500,568	-		BPHYT_RS30950	0.63	+2.4
2,500,978	-		BPHYT_RS30950	0.80	+0.9
2,501,087	+		BPHYT_RS30950	0.84	+0.6
2,501,220	+		BPHYT_RS30950	0.89	+0.0
2,501,223	+		BPHYT_RS30950	0.89	-0.5
2,501,224	-		BPHYT_RS30950	0.89	+1.1
2,501,224	-		BPHYT_RS30950	0.89	+0.1
2,501,245	+				-0.9
2,501,245	+				+1.0
2,501,315	+				-0.6
2,501,386	-				-0.6
2,501,452	-				-0.4
2,501,476	-				-2.0
2,501,532	-				-2.5
2,501,728	-		BPHYT_RS30955	0.17	-0.3
2,502,045	-		BPHYT_RS30955	0.48	-0.2
2,502,125	+		BPHYT_RS30955	0.55	+1.0
2,502,150	-		BPHYT_RS30955	0.58	-0.1
2,502,161	-		BPHYT_RS30955	0.59	-1.7
2,502,258	+		BPHYT_RS30955	0.68	+2.2
2,502,319	+		BPHYT_RS30955	0.74	+0.3
2,502,335	+		BPHYT_RS30955	0.76	-1.1
2,502,336	-		BPHYT_RS30955	0.76	+0.0
2,502,336	-		BPHYT_RS30955	0.76	+4.3
2,502,579	-				-0.4
2,502,620	-				-1.3
2,502,692	+				+0.2
2,503,434	+				-1.3