Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30860

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,477,834	+		BPHYT_RS30855	0.24	+2.3
2,477,834	+		BPHYT_RS30855	0.24	-0.6
2,478,062	+		BPHYT_RS30855	0.45	+1.0
2,478,063	-		BPHYT_RS30855	0.45	+0.2
2,478,949	+		BPHYT_RS30860	0.28	-0.3
2,479,263	+		BPHYT_RS30860	0.60	+0.3
2,479,960	-				-0.6
2,480,164	+		BPHYT_RS30865	0.65	+4.7
2,480,164	+		BPHYT_RS30865	0.65	+3.0
2,480,165	-		BPHYT_RS30865	0.65	-0.2
2,480,284	-		BPHYT_RS30865	0.81	+1.8