Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30510

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,403,062	-		BPHYT_RS30500	0.87	-1.9
2,403,253	+				-0.9
2,403,559	-		BPHYT_RS30505	0.48	-0.4
2,403,991	-				+0.2
2,404,546	+		BPHYT_RS30510	0.39	-0.7
2,405,070	+		BPHYT_RS30510	0.75	-0.3
2,405,924	-		BPHYT_RS30515	0.24	+1.3
2,406,261	+		BPHYT_RS30515	0.44	-1.5