Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29680

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,210,992	+		BPHYT_RS29675	0.67	-0.6
2,211,467	-				-0.2
2,211,698	+		BPHYT_RS29680	0.42	-0.5
2,211,723	+		BPHYT_RS29680	0.46	+0.1
2,211,723	+		BPHYT_RS29680	0.46	-1.8
2,211,723	+		BPHYT_RS29680	0.46	+0.5
2,211,769	-		BPHYT_RS29680	0.53	+0.4
2,212,044	-				-1.1
2,212,164	+				-2.3
2,212,165	-				-0.2
2,212,284	-				+0.6
2,213,018	+		BPHYT_RS29690	0.41	-0.4
2,213,019	-		BPHYT_RS29690	0.41	+0.6
2,213,084	+		BPHYT_RS29690	0.49	+0.1
2,213,086	+		BPHYT_RS29690	0.49	+1.3