Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS29670 and BPHYT_RS29675 are separated by 14 nucleotides BPHYT_RS29675 and BPHYT_RS29680 are separated by 86 nucleotides BPHYT_RS29680 and BPHYT_RS29685 are separated by 171 nucleotides
BPHYT_RS29670: BPHYT_RS29670 - flagellar motor protein MotA, at 2,209,448 to 2,210,317
_RS29670
BPHYT_RS29675: BPHYT_RS29675 - flagellar motor protein MotB, at 2,210,332 to 2,211,321
_RS29675
BPHYT_RS29680: BPHYT_RS29680 - hypothetical protein, at 2,211,408 to 2,212,091
_RS29680
BPHYT_RS29685: BPHYT_RS29685 - hypothetical protein, at 2,212,263 to 2,212,550
_RS29685
Position (kb)
2210
2211
2212 Strain fitness (log2 ratio)
-2
-1
0
1 at 2209.670 kb on + strand, within BPHYT_RS29670 at 2209.833 kb on - strand, within BPHYT_RS29670 at 2209.866 kb on + strand, within BPHYT_RS29670 at 2210.097 kb on - strand, within BPHYT_RS29670 at 2210.992 kb on + strand, within BPHYT_RS29675 at 2211.467 kb on - strand at 2211.698 kb on + strand, within BPHYT_RS29680 at 2211.723 kb on + strand, within BPHYT_RS29680 at 2211.723 kb on + strand, within BPHYT_RS29680 at 2211.723 kb on + strand, within BPHYT_RS29680 at 2211.769 kb on - strand, within BPHYT_RS29680 at 2212.044 kb on - strand at 2212.164 kb on + strand at 2212.165 kb on - strand at 2212.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 2,209,670 + BPHYT_RS29670 0.26 -1.0 2,209,833 - BPHYT_RS29670 0.44 +1.1 2,209,866 + BPHYT_RS29670 0.48 -0.3 2,210,097 - BPHYT_RS29670 0.75 -1.0 2,210,992 + BPHYT_RS29675 0.67 -0.6 2,211,467 - -0.2 2,211,698 + BPHYT_RS29680 0.42 -0.5 2,211,723 + BPHYT_RS29680 0.46 +0.1 2,211,723 + BPHYT_RS29680 0.46 -1.8 2,211,723 + BPHYT_RS29680 0.46 +0.5 2,211,769 - BPHYT_RS29680 0.53 +0.4 2,212,044 - -1.1 2,212,164 + -2.3 2,212,165 - -0.2 2,212,284 - +0.6
Or see this region's nucleotide sequence