Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29565

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,185,753	+		BPHYT_RS29560	0.73	+0.7
2,185,753	+		BPHYT_RS29560	0.73	-0.4
2,186,227	+		BPHYT_RS29560	0.88	+0.1
2,186,524	+				-0.6
2,186,524	+				+0.2
2,186,525	-				+0.8
2,186,525	-				-0.1
2,186,525	-				-0.4
2,186,526	+				-0.2
2,186,527	-				+0.2
2,186,862	+		BPHYT_RS29565	0.17	+0.5
2,186,863	-		BPHYT_RS29565	0.17	-1.5
2,187,118	-		BPHYT_RS29565	0.34	-0.2
2,187,342	+				+1.2
2,187,343	-		BPHYT_RS29565	0.49	+0.4
2,187,531	+		BPHYT_RS29565	0.62	-1.4
2,187,531	+		BPHYT_RS29565	0.62	-0.4
2,187,597	+		BPHYT_RS29565	0.66	+0.3
2,187,717	+		BPHYT_RS29565	0.74	-0.6
2,187,738	+		BPHYT_RS29565	0.75	-0.4
2,187,739	-		BPHYT_RS29565	0.75	-0.1
2,188,108	+				-0.2
2,188,108	+				+0.9
2,188,109	-				+0.1
2,188,147	-				-0.2
2,188,352	-				-0.2
2,188,358	+				+1.0
2,188,359	-				+0.1
2,188,514	+		BPHYT_RS29570	0.16	-0.2
2,188,521	-		BPHYT_RS29570	0.16	-0.6
2,188,521	-		BPHYT_RS29570	0.16	-1.7
2,189,044	-		BPHYT_RS29570	0.76	+0.1