Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29555

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,181,798	+		BPHYT_RS29550	0.68	-1.1
2,182,114	-		BPHYT_RS29550	0.88	+0.3
2,182,114	-		BPHYT_RS29550	0.88	-1.9
2,182,157	-				+3.1
2,182,716	-		BPHYT_RS29555	0.31	-0.5
2,182,769	-		BPHYT_RS29555	0.35	-1.8
2,182,930	+		BPHYT_RS29555	0.49	-0.8
2,182,931	-		BPHYT_RS29555	0.49	-0.5
2,183,059	+		BPHYT_RS29555	0.60	-0.4
2,183,182	+		BPHYT_RS29555	0.71	-0.1
2,183,183	-		BPHYT_RS29555	0.71	-2.8
2,183,252	-		BPHYT_RS29555	0.77	+1.4
2,183,274	-		BPHYT_RS29555	0.79	-0.8
2,183,513	-				-1.9
2,183,678	-				+0.0
2,183,678	-				-0.9
2,183,680	+				-0.3
2,183,762	-				+1.7
2,183,853	+		BPHYT_RS29560	0.11	-1.3
2,183,854	-		BPHYT_RS29560	0.11	-1.1
2,183,945	-		BPHYT_RS29560	0.14	+0.2
2,183,992	+		BPHYT_RS29560	0.15	+1.4
2,183,993	-		BPHYT_RS29560	0.15	+0.5
2,184,135	-		BPHYT_RS29560	0.20	+0.3
2,184,160	+		BPHYT_RS29560	0.21	+0.7
2,184,232	-		BPHYT_RS29560	0.23	-0.7
2,184,311	+		BPHYT_RS29560	0.26	+0.2
2,184,329	-		BPHYT_RS29560	0.26	-0.2