Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29195

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,105,096	-		BPHYT_RS29190	0.68	-1.0
2,105,339	+		BPHYT_RS29190	0.88	+1.1
2,105,340	-		BPHYT_RS29190	0.88	+0.2
2,105,341	+		BPHYT_RS29190	0.88	+1.0
2,105,342	-		BPHYT_RS29190	0.88	+0.5
2,105,558	+				+0.4
2,105,559	-				-0.7
2,105,559	-				-0.0
2,105,579	+				+0.5
2,105,677	-				-0.1
2,105,876	+		BPHYT_RS29195	0.21	-1.0
2,105,876	+		BPHYT_RS29195	0.21	+4.7
2,105,877	-		BPHYT_RS29195	0.21	-0.5
2,105,980	+		BPHYT_RS29195	0.28	+0.3
2,106,039	-		BPHYT_RS29195	0.33	+1.3
2,106,557	+		BPHYT_RS29195	0.69	+0.1
2,106,557	+		BPHYT_RS29195	0.69	+1.9
2,106,740	+		BPHYT_RS29195	0.82	-0.2
2,106,858	-				+0.4
2,107,088	+				-0.7
2,107,571	+		BPHYT_RS29200	0.25	-0.4
2,107,571	+		BPHYT_RS29200	0.25	+1.0
2,107,736	+		BPHYT_RS29200	0.39	+1.3
2,107,737	-		BPHYT_RS29200	0.39	-0.7