Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29175

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,100,924	-		BPHYT_RS29170	0.79	+0.5
2,101,168	-				+0.6
2,101,168	-				-0.6
2,101,197	+				+0.5
2,101,239	-				+0.6
2,101,702	+		BPHYT_RS29175	0.43	+1.6
2,101,703	-		BPHYT_RS29175	0.43	+1.8
2,102,008	+		BPHYT_RS29175	0.69	+0.5
2,102,361	-				-0.5
2,102,439	-				-0.5
2,102,491	-		BPHYT_RS29180	0.12	+0.5
2,102,492	+		BPHYT_RS29180	0.12	-1.4
2,102,732	+		BPHYT_RS29180	0.38	+0.4
2,103,155	+		BPHYT_RS29180	0.84	+0.5