Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28950

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,045,708	-		BPHYT_RS28945	0.32	-1.5
2,046,022	-		BPHYT_RS28945	0.58	+0.4
2,046,118	+		BPHYT_RS28945	0.66	+0.6
2,046,783	+				+0.6
2,046,988	-		BPHYT_RS28950	0.10	-0.4
2,047,255	-		BPHYT_RS28950	0.16	+0.2
2,047,600	-		BPHYT_RS28950	0.23	+0.4
2,047,609	-		BPHYT_RS28950	0.23	+0.3
2,048,062	-		BPHYT_RS28950	0.33	-1.0
2,048,062	-		BPHYT_RS28950	0.33	-0.5
2,049,177	+		BPHYT_RS28950	0.57	-0.4
2,049,284	+		BPHYT_RS28950	0.59	-0.0
2,049,284	+		BPHYT_RS28950	0.59	-0.5
2,049,337	-		BPHYT_RS28950	0.60	-0.0
2,049,388	-		BPHYT_RS28950	0.61	-1.0
2,049,523	-		BPHYT_RS28950	0.64	-1.4
2,049,652	-		BPHYT_RS28950	0.67	-1.3
2,049,931	-		BPHYT_RS28950	0.73	-0.8
2,049,973	-		BPHYT_RS28950	0.74	+0.3
2,050,404	+		BPHYT_RS28950	0.83	-1.0
2,050,405	-		BPHYT_RS28950	0.83	+0.5
2,050,625	-		BPHYT_RS28950	0.87	+0.7
2,050,625	-		BPHYT_RS28950	0.87	-0.1
2,050,634	+		BPHYT_RS28950	0.88	+0.8
2,050,746	+				-0.5
2,052,105	+		BPHYT_RS28955	0.67	+0.6