Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28730

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,998,061	+		BPHYT_RS28725	0.46	+0.2
1,998,132	+		BPHYT_RS28725	0.53	+0.7
1,998,352	-		BPHYT_RS28725	0.74	+0.4
1,998,352	-		BPHYT_RS28725	0.74	-0.3
1,998,356	-		BPHYT_RS28725	0.75	+1.3
1,998,451	+		BPHYT_RS28725	0.84	-0.8
1,998,451	+		BPHYT_RS28725	0.84	+2.4
1,998,452	-		BPHYT_RS28725	0.84	+0.4
1,998,725	+				+0.9
1,999,004	+				+0.4
1,999,040	+				-1.6
1,999,041	-				+0.2
1,999,066	+				+0.7
1,999,067	-				-0.7
1,999,616	-		BPHYT_RS28730	0.38	-2.3
1,999,719	+		BPHYT_RS28730	0.45	-0.6
2,000,202	-		BPHYT_RS28730	0.77	-0.3
2,000,341	+		BPHYT_RS28730	0.86	+1.1
2,000,342	-		BPHYT_RS28730	0.86	-0.8
2,000,817	-		BPHYT_RS28735	0.15	+0.7
2,000,878	+		BPHYT_RS28735	0.24	-0.2
2,000,879	-		BPHYT_RS28735	0.24	+1.4
2,001,073	-		BPHYT_RS28735	0.52	-0.8
2,001,077	-		BPHYT_RS28735	0.53	+0.1
2,001,077	-		BPHYT_RS28735	0.53	+0.3
2,001,406	+				+0.6
2,001,438	-				+0.8
2,001,480	+				-0.1
2,001,489	-				+3.5