Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28630 and BPHYT_RS28635 are separated by 87 nucleotides BPHYT_RS28635 and BPHYT_RS28640 are separated by 463 nucleotides BPHYT_RS28640 and BPHYT_RS28645 are separated by 1 nucleotides BPHYT_RS28645 and BPHYT_RS28650 overlap by 16 nucleotides
BPHYT_RS28630: BPHYT_RS28630 - IclR family transcriptional regulator, at 1,977,819 to 1,978,610
_RS28630
BPHYT_RS28635: BPHYT_RS28635 - hypothetical protein, at 1,978,698 to 1,978,919
_RS28635
BPHYT_RS28640: BPHYT_RS28640 - ATPase, at 1,979,383 to 1,981,047
_RS28640
BPHYT_RS28645: BPHYT_RS28645 - serine/threonine protein kinase, at 1,981,049 to 1,982,041
_RS28645
BPHYT_RS28650: BPHYT_RS28650 - anti-sigma regulatory factor, at 1,982,026 to 1,982,436
_RS28650
Position (kb) 1979
1980
1981
1982 Strain fitness (log2 ratio) -1
0
1
2 at 1978.388 kb on - strand, within BPHYT_RS28630 at 1978.417 kb on + strand, within BPHYT_RS28630 at 1978.589 kb on + strand at 1978.699 kb on + strand at 1978.852 kb on - strand, within BPHYT_RS28635 at 1978.852 kb on - strand, within BPHYT_RS28635 at 1979.035 kb on + strand at 1979.335 kb on - strand at 1979.776 kb on - strand, within BPHYT_RS28640 at 1979.803 kb on + strand, within BPHYT_RS28640 at 1980.103 kb on - strand, within BPHYT_RS28640 at 1980.103 kb on - strand, within BPHYT_RS28640 at 1980.103 kb on - strand, within BPHYT_RS28640 at 1980.948 kb on + strand at 1981.075 kb on + strand at 1981.075 kb on + strand at 1981.505 kb on - strand, within BPHYT_RS28645 at 1981.698 kb on + strand, within BPHYT_RS28645 at 1981.714 kb on + strand, within BPHYT_RS28645 at 1981.844 kb on - strand, within BPHYT_RS28645 at 1981.844 kb on - strand, within BPHYT_RS28645 at 1981.858 kb on - strand, within BPHYT_RS28645 at 1981.890 kb on + strand, within BPHYT_RS28645 at 1981.891 kb on - strand, within BPHYT_RS28645 at 1981.898 kb on + strand, within BPHYT_RS28645 at 1981.900 kb on + strand, within BPHYT_RS28645 at 1982.046 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,978,388 - BPHYT_RS28630 0.72 +1.6 1,978,417 + BPHYT_RS28630 0.76 +0.6 1,978,589 + +0.1 1,978,699 + -0.9 1,978,852 - BPHYT_RS28635 0.69 +0.2 1,978,852 - BPHYT_RS28635 0.69 +0.2 1,979,035 + +0.6 1,979,335 - -1.0 1,979,776 - BPHYT_RS28640 0.24 -0.4 1,979,803 + BPHYT_RS28640 0.25 -0.9 1,980,103 - BPHYT_RS28640 0.43 -0.4 1,980,103 - BPHYT_RS28640 0.43 +0.8 1,980,103 - BPHYT_RS28640 0.43 +2.4 1,980,948 + -0.5 1,981,075 + -1.5 1,981,075 + +1.6 1,981,505 - BPHYT_RS28645 0.46 -0.2 1,981,698 + BPHYT_RS28645 0.65 -0.5 1,981,714 + BPHYT_RS28645 0.67 -0.1 1,981,844 - BPHYT_RS28645 0.80 +1.3 1,981,844 - BPHYT_RS28645 0.80 +0.8 1,981,858 - BPHYT_RS28645 0.81 -0.7 1,981,890 + BPHYT_RS28645 0.85 +0.4 1,981,891 - BPHYT_RS28645 0.85 +0.1 1,981,898 + BPHYT_RS28645 0.85 +0.8 1,981,900 + BPHYT_RS28645 0.86 +0.3 1,982,046 + +0.8
Or see this region's nucleotide sequence