Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28545

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,959,017	-		BPHYT_RS28540	0.24	+2.1
1,959,017	-				-0.1
1,959,250	-		BPHYT_RS28540	0.44	-0.3
1,959,264	+		BPHYT_RS28540	0.45	-0.3
1,959,373	-		BPHYT_RS28540	0.54	+0.6
1,959,453	+		BPHYT_RS28540	0.61	+0.3
1,959,472	-		BPHYT_RS28540	0.63	-0.6
1,959,546	+		BPHYT_RS28540	0.69	+1.1
1,959,652	+		BPHYT_RS28540	0.79	+0.4
1,959,771	-		BPHYT_RS28540	0.89	+0.4
1,959,981	+				+2.0
1,960,049	+				-0.4
1,960,077	+				-0.6
1,960,077	+				+0.2
1,960,077	+				-0.1
1,960,102	-		BPHYT_RS28545	0.12	-1.1
1,960,576	-		BPHYT_RS28545	0.60	+1.7