Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28075

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,861,921	+		BPHYT_RS28070	0.70	+0.1
1,861,921	+		BPHYT_RS28070	0.70	-0.2
1,861,922	-		BPHYT_RS28070	0.70	+0.5
1,861,923	+		BPHYT_RS28070	0.70	-0.6
1,862,065	+		BPHYT_RS28070	0.81	+0.5
1,862,444	+				-0.7
1,862,444	+				+0.4
1,862,445	-				-0.0
1,862,445	-				-2.3
1,862,454	-				+0.5
1,862,652	+		BPHYT_RS28075	0.39	-0.7
1,863,482	+				-0.2
1,863,482	+				-0.1
1,863,482	+				-0.4
1,863,771	-				+0.3
1,863,773	+				-0.9
1,863,774	-				+0.5
1,863,774	-				-1.0
1,863,829	+				+0.3