Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28070

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28060 and BPHYT_RS28065 are separated by 288 nucleotidesBPHYT_RS28065 and BPHYT_RS28070 are separated by 152 nucleotidesBPHYT_RS28070 and BPHYT_RS28075 are separated by 133 nucleotidesBPHYT_RS28075 and BPHYT_RS28080 are separated by 195 nucleotides BPHYT_RS28060: BPHYT_RS28060 - hypothetical protein, at 1,859,816 to 1,860,073 _RS28060 BPHYT_RS28065: BPHYT_RS28065 - hypothetical protein, at 1,860,362 to 1,860,859 _RS28065 BPHYT_RS28070: BPHYT_RS28070 - adenine permease, at 1,861,012 to 1,862,313 _RS28070 BPHYT_RS28075: BPHYT_RS28075 - cytochrome B561, at 1,862,447 to 1,862,977 _RS28075 BPHYT_RS28080: BPHYT_RS28080 - hypothetical protein, at 1,863,173 to 1,863,463 _RS28080 Position (kb) 1861 1862 1863Strain fitness (log2 ratio) -2 -1 0 1at 1860.282 kb on - strandat 1860.319 kb on + strandat 1860.319 kb on + strandat 1860.320 kb on - strandat 1860.416 kb on + strand, within BPHYT_RS28065at 1860.417 kb on - strand, within BPHYT_RS28065at 1861.022 kb on + strandat 1861.023 kb on - strandat 1861.109 kb on - strandat 1861.109 kb on - strandat 1861.109 kb on - strandat 1861.229 kb on - strand, within BPHYT_RS28070at 1861.276 kb on + strand, within BPHYT_RS28070at 1861.410 kb on - strand, within BPHYT_RS28070at 1861.921 kb on + strand, within BPHYT_RS28070at 1861.921 kb on + strand, within BPHYT_RS28070at 1861.922 kb on - strand, within BPHYT_RS28070at 1861.923 kb on + strand, within BPHYT_RS28070at 1862.065 kb on + strand, within BPHYT_RS28070at 1862.444 kb on + strandat 1862.444 kb on + strandat 1862.445 kb on - strandat 1862.445 kb on - strandat 1862.454 kb on - strandat 1862.652 kb on + strand, within BPHYT_RS28075

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
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1,860,282 - +0.2
1,860,319 + -0.7
1,860,319 + -0.4
1,860,320 - -0.4
1,860,416 + BPHYT_RS28065 0.11 +0.4
1,860,417 - BPHYT_RS28065 0.11 +0.5
1,861,022 + +0.3
1,861,023 - -0.1
1,861,109 - +0.4
1,861,109 - -0.1
1,861,109 - -0.1
1,861,229 - BPHYT_RS28070 0.17 -0.1
1,861,276 + BPHYT_RS28070 0.20 -0.5
1,861,410 - BPHYT_RS28070 0.31 +0.0
1,861,921 + BPHYT_RS28070 0.70 +0.1
1,861,921 + BPHYT_RS28070 0.70 -0.2
1,861,922 - BPHYT_RS28070 0.70 +0.5
1,861,923 + BPHYT_RS28070 0.70 -0.6
1,862,065 + BPHYT_RS28070 0.81 +0.5
1,862,444 + -0.7
1,862,444 + +0.4
1,862,445 - -0.0
1,862,445 - -2.3
1,862,454 - +0.5
1,862,652 + BPHYT_RS28075 0.39 -0.7

Or see this region's nucleotide sequence