Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28065

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,859,653	-				-0.6
1,859,773	+				+0.9
1,859,804	+				-0.2
1,859,866	+		BPHYT_RS28060	0.19	-0.1
1,859,866	+		BPHYT_RS28060	0.19	-0.5
1,859,867	-		BPHYT_RS28060	0.20	+0.6
1,859,900	+		BPHYT_RS28060	0.33	-1.0
1,859,900	+		BPHYT_RS28060	0.33	-0.3
1,859,901	-		BPHYT_RS28060	0.33	+0.2
1,859,901	-		BPHYT_RS28060	0.33	-0.9
1,860,282	-				+0.2
1,860,319	+				-0.7
1,860,319	+				-0.4
1,860,320	-				-0.4
1,860,416	+		BPHYT_RS28065	0.11	+0.4
1,860,417	-		BPHYT_RS28065	0.11	+0.5
1,861,022	+				+0.3
1,861,023	-				-0.1
1,861,109	-				+0.4
1,861,109	-				-0.1
1,861,109	-				-0.1
1,861,229	-		BPHYT_RS28070	0.17	-0.1
1,861,276	+		BPHYT_RS28070	0.20	-0.5
1,861,410	-		BPHYT_RS28070	0.31	+0.0