Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27790

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,795,253	+		BPHYT_RS27785	0.80	-0.7
1,795,359	+				-0.4
1,795,446	+				+0.9
1,795,447	-				-0.1
1,795,657	+		BPHYT_RS27790	0.11	+0.1
1,795,657	+		BPHYT_RS27790	0.11	-1.5
1,795,856	-		BPHYT_RS27790	0.21	-0.9
1,796,069	-		BPHYT_RS27790	0.33	-1.0
1,796,876	-		BPHYT_RS27790	0.76	-2.1
1,797,994	+		BPHYT_RS27795	0.42	-0.9
1,797,994	+		BPHYT_RS27795	0.42	+0.2
1,798,022	+		BPHYT_RS27795	0.46	-0.7
1,798,131	-		BPHYT_RS27795	0.62	-0.9
1,798,131	-		BPHYT_RS27795	0.62	-0.2
1,798,182	+		BPHYT_RS27795	0.70	-0.3
1,798,260	+		BPHYT_RS27795	0.82	-0.4
1,798,260	+		BPHYT_RS27795	0.82	-0.7