Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27625

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,766,060	+				-1.3
1,766,111	+				+0.1
1,766,411	+		BPHYT_RS27620	0.57	-0.9
1,766,563	+				+0.5
1,766,712	+		BPHYT_RS27625	0.21	-0.0
1,766,714	+		BPHYT_RS27625	0.21	-1.1
1,767,098	-		BPHYT_RS27625	0.80	-0.7
1,767,249	+				+1.4
1,767,381	-				-0.7
1,767,592	+				-0.6
1,768,015	-		BPHYT_RS27635	0.18	-1.3
1,768,073	-		BPHYT_RS27635	0.23	-2.3