Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27490

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,742,936	-		BPHYT_RS27485	0.47	-0.4
1,743,109	+		BPHYT_RS27485	0.74	+0.2
1,743,330	+				+0.0
1,743,438	+				+1.3
1,744,056	+		BPHYT_RS27490	0.41	+0.0
1,744,057	-		BPHYT_RS27490	0.41	-1.4
1,744,374	+		BPHYT_RS27490	0.68	+4.4
1,744,492	-		BPHYT_RS27490	0.78	-0.7
1,744,497	+		BPHYT_RS27490	0.79	+0.2
1,745,087	-				+0.2
1,745,106	+				+0.5
1,745,140	-				-1.1
1,745,140	-				-0.9
1,745,140	-				-0.4
1,745,247	+		BPHYT_RS27495	0.24	+0.7
1,745,556	-				-0.6
1,745,590	-				-0.0
1,745,717	+				+0.1