Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27310

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,702,030	-				+0.1
1,702,050	-				-0.4
1,702,274	+		BPHYT_RS27305	0.36	+0.9
1,702,424	+		BPHYT_RS27305	0.79	+0.6
1,702,715	-				-0.2
1,702,720	-				-1.4
1,702,865	-				+0.6
1,702,943	-				+0.1
1,703,838	-				+2.3
1,703,838	-				+1.0
1,704,101	-		BPHYT_RS27315	0.19	+0.1
1,704,359	-		BPHYT_RS27315	0.58	+0.1
1,704,359	-		BPHYT_RS27315	0.58	-0.1
1,704,464	+		BPHYT_RS27315	0.74	-1.2
1,704,864	+				-1.6
1,704,864	+				+0.1
1,704,864	+				-1.4
1,704,864	+				+0.1
1,704,865	-				+1.4
1,704,900	+				+0.0
1,704,901	-				-1.7