Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27000

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,634,574	+		BPHYT_RS26995	0.63	-1.3
1,634,575	-		BPHYT_RS26995	0.63	+0.8
1,634,575	-		BPHYT_RS26995	0.63	-0.3
1,635,066	-				-0.6
1,635,066	-				+0.3
1,635,067	+				-0.4
1,635,446	+				+0.5
1,635,970	+		BPHYT_RS27000	0.47	-0.0
1,635,971	-		BPHYT_RS27000	0.47	-0.5
1,635,993	+		BPHYT_RS27000	0.49	-0.1
1,636,023	-		BPHYT_RS27000	0.52	-0.6
1,636,213	+		BPHYT_RS27000	0.68	-0.6
1,636,213	+		BPHYT_RS27000	0.68	-0.6
1,636,214	-		BPHYT_RS27000	0.68	+2.3
1,636,214	-		BPHYT_RS27000	0.68	-1.0
1,636,396	+		BPHYT_RS27000	0.84	+1.2
1,636,479	+				-0.4
1,636,480	-				+0.3
1,636,777	-				-1.8
1,636,992	+		BPHYT_RS27005	0.18	-6.6
1,636,993	-		BPHYT_RS27005	0.18	-0.5
1,637,248	-		BPHYT_RS27005	0.35	+0.2
1,637,343	+		BPHYT_RS27005	0.42	-1.9
1,637,343	+		BPHYT_RS27005	0.42	-1.4
1,637,344	-		BPHYT_RS27005	0.42	-0.3
1,637,344	-		BPHYT_RS27005	0.42	-1.6