Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26995

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,632,564	+				+0.7
1,632,642	+		BPHYT_RS26990	0.16	-1.0
1,632,881	-		BPHYT_RS26990	0.48	+1.3
1,632,918	+		BPHYT_RS26990	0.53	+1.1
1,633,379	-				-0.3
1,633,521	+				+1.3
1,633,614	+				-0.5
1,633,707	+		BPHYT_RS26995	0.14	-1.2
1,633,708	-		BPHYT_RS26995	0.14	-0.9
1,633,713	-		BPHYT_RS26995	0.15	-0.3
1,633,881	+		BPHYT_RS26995	0.24	-0.7
1,634,358	+		BPHYT_RS26995	0.51	+1.0
1,634,574	+		BPHYT_RS26995	0.63	-1.3
1,634,575	-		BPHYT_RS26995	0.63	+0.8
1,634,575	-		BPHYT_RS26995	0.63	-0.3
1,635,066	-				-0.6
1,635,066	-				+0.3
1,635,067	+				-0.4
1,635,446	+				+0.5
1,635,970	+		BPHYT_RS27000	0.47	-0.0
1,635,971	-		BPHYT_RS27000	0.47	-0.5
1,635,993	+		BPHYT_RS27000	0.49	-0.1
1,636,023	-		BPHYT_RS27000	0.52	-0.6
1,636,213	+		BPHYT_RS27000	0.68	-0.6
1,636,213	+		BPHYT_RS27000	0.68	-0.6
1,636,214	-		BPHYT_RS27000	0.68	+2.3
1,636,214	-		BPHYT_RS27000	0.68	-1.0