Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26865

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26860 and BPHYT_RS26865 are separated by 37 nucleotidesBPHYT_RS26865 and BPHYT_RS26870 are separated by 278 nucleotidesBPHYT_RS26870 and BPHYT_RS26875 are separated by 19 nucleotides BPHYT_RS26860: BPHYT_RS26860 - major facilitator transporter, at 1,599,116 to 1,600,555 _RS26860 BPHYT_RS26865: BPHYT_RS26865 - GNAT family acetyltransferase, at 1,600,593 to 1,601,027 _RS26865 BPHYT_RS26870: BPHYT_RS26870 - cytochrome C551, at 1,601,306 to 1,601,974 _RS26870 BPHYT_RS26875: BPHYT_RS26875 - procollagen-proline dioxygenase, at 1,601,994 to 1,602,881 _RS26875 Position (kb) 1600 1601 1602Strain fitness (log2 ratio) -2 -1 0 1at 1599.595 kb on + strand, within BPHYT_RS26860at 1599.602 kb on + strand, within BPHYT_RS26860at 1599.602 kb on + strand, within BPHYT_RS26860at 1599.603 kb on - strand, within BPHYT_RS26860at 1599.838 kb on - strand, within BPHYT_RS26860at 1599.971 kb on + strand, within BPHYT_RS26860at 1599.971 kb on + strand, within BPHYT_RS26860at 1600.478 kb on + strandat 1600.748 kb on + strand, within BPHYT_RS26865at 1600.749 kb on - strand, within BPHYT_RS26865at 1600.806 kb on + strand, within BPHYT_RS26865at 1600.852 kb on - strand, within BPHYT_RS26865at 1600.942 kb on + strand, within BPHYT_RS26865at 1600.942 kb on + strand, within BPHYT_RS26865at 1600.943 kb on - strand, within BPHYT_RS26865at 1600.943 kb on - strand, within BPHYT_RS26865at 1600.943 kb on - strand, within BPHYT_RS26865at 1600.945 kb on - strand, within BPHYT_RS26865at 1600.945 kb on - strand, within BPHYT_RS26865at 1601.053 kb on + strandat 1601.053 kb on + strandat 1601.462 kb on + strand, within BPHYT_RS26870at 1601.630 kb on - strand, within BPHYT_RS26870at 1601.871 kb on - strand, within BPHYT_RS26870at 1601.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
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1,599,595 + BPHYT_RS26860 0.33 -0.4
1,599,602 + BPHYT_RS26860 0.34 -1.0
1,599,602 + BPHYT_RS26860 0.34 -0.6
1,599,603 - BPHYT_RS26860 0.34 +0.5
1,599,838 - BPHYT_RS26860 0.50 +0.1
1,599,971 + BPHYT_RS26860 0.59 -0.0
1,599,971 + BPHYT_RS26860 0.59 -0.5
1,600,478 + -0.6
1,600,748 + BPHYT_RS26865 0.36 -1.1
1,600,749 - BPHYT_RS26865 0.36 -0.0
1,600,806 + BPHYT_RS26865 0.49 -0.2
1,600,852 - BPHYT_RS26865 0.60 +0.9
1,600,942 + BPHYT_RS26865 0.80 +1.5
1,600,942 + BPHYT_RS26865 0.80 +0.8
1,600,943 - BPHYT_RS26865 0.80 -0.9
1,600,943 - BPHYT_RS26865 0.80 -1.0
1,600,943 - BPHYT_RS26865 0.80 +0.2
1,600,945 - BPHYT_RS26865 0.81 +0.3
1,600,945 - BPHYT_RS26865 0.81 +0.7
1,601,053 + +0.5
1,601,053 + -1.8
1,601,462 + BPHYT_RS26870 0.23 -0.3
1,601,630 - BPHYT_RS26870 0.48 -0.3
1,601,871 - BPHYT_RS26870 0.84 +0.0
1,601,973 - -0.2

Or see this region's nucleotide sequence