Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26765 and BPHYT_RS26770 are separated by 195 nucleotides BPHYT_RS26770 and BPHYT_RS26775 are separated by 9 nucleotides BPHYT_RS26775 and BPHYT_RS26780 are separated by 10 nucleotides
BPHYT_RS26765: BPHYT_RS26765 - LuxR family transcriptional regulator, at 1,574,684 to 1,575,502
_RS26765
BPHYT_RS26770: BPHYT_RS26770 - histidine kinase, at 1,575,698 to 1,576,825
_RS26770
BPHYT_RS26775: BPHYT_RS26775 - chemotaxis protein CheB, at 1,576,835 to 1,577,449
_RS26775
BPHYT_RS26780: BPHYT_RS26780 - chemotaxis protein CheR, at 1,577,460 to 1,578,305
_RS26780
Position (kb) 1575
1576
1577 Strain fitness (log2 ratio) -1
0
1
2 at 1574.766 kb on + strand, within BPHYT_RS26765 at 1574.767 kb on - strand, within BPHYT_RS26765 at 1574.770 kb on + strand, within BPHYT_RS26765 at 1574.770 kb on + strand, within BPHYT_RS26765 at 1574.770 kb on + strand, within BPHYT_RS26765 at 1575.143 kb on + strand, within BPHYT_RS26765 at 1575.238 kb on - strand, within BPHYT_RS26765 at 1575.700 kb on - strand at 1575.700 kb on - strand at 1575.893 kb on - strand, within BPHYT_RS26770 at 1576.079 kb on - strand, within BPHYT_RS26770 at 1576.244 kb on - strand, within BPHYT_RS26770 at 1576.887 kb on + strand at 1577.182 kb on + strand, within BPHYT_RS26775 at 1577.461 kb on + strand at 1577.462 kb on - strand at 1577.512 kb on + strand at 1577.623 kb on + strand, within BPHYT_RS26780 at 1577.743 kb on + strand, within BPHYT_RS26780 at 1577.794 kb on + strand, within BPHYT_RS26780
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,574,766 + BPHYT_RS26765 0.10 -0.3 1,574,767 - BPHYT_RS26765 0.10 -0.3 1,574,770 + BPHYT_RS26765 0.11 +2.1 1,574,770 + BPHYT_RS26765 0.11 +0.7 1,574,770 + BPHYT_RS26765 0.11 -1.5 1,575,143 + BPHYT_RS26765 0.56 +0.2 1,575,238 - BPHYT_RS26765 0.68 -0.2 1,575,700 - -1.3 1,575,700 - -1.0 1,575,893 - BPHYT_RS26770 0.17 -0.1 1,576,079 - BPHYT_RS26770 0.34 +0.8 1,576,244 - BPHYT_RS26770 0.48 -0.4 1,576,887 + -0.9 1,577,182 + BPHYT_RS26775 0.56 -1.1 1,577,461 + +0.2 1,577,462 - -0.2 1,577,512 + +1.2 1,577,623 + BPHYT_RS26780 0.19 -0.3 1,577,743 + BPHYT_RS26780 0.33 -0.2 1,577,794 + BPHYT_RS26780 0.39 -0.3
Or see this region's nucleotide sequence