Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26680 and BPHYT_RS26685 overlap by 8 nucleotides BPHYT_RS26685 and BPHYT_RS26690 are separated by 0 nucleotides BPHYT_RS26690 and BPHYT_RS26695 overlap by 13 nucleotides
BPHYT_RS26680: BPHYT_RS26680 - oxidoreductase, at 1,554,444 to 1,555,886
_RS26680
BPHYT_RS26685: BPHYT_RS26685 - precorrin-8X methylmutase, at 1,555,879 to 1,556,505
_RS26685
BPHYT_RS26690: BPHYT_RS26690 - precorrin-2 C20-methyltransferase, at 1,556,506 to 1,557,237
_RS26690
BPHYT_RS26695: BPHYT_RS26695 - cobalamin biosynthesis protein CbiG, at 1,557,225 to 1,558,937
_RS26695
Position (kb) 1555
1556
1557 Strain fitness (log2 ratio) -1
0
1
2 at 1555.034 kb on + strand, within BPHYT_RS26680 at 1555.035 kb on - strand, within BPHYT_RS26680 at 1555.059 kb on - strand, within BPHYT_RS26680 at 1555.147 kb on + strand, within BPHYT_RS26680 at 1555.147 kb on + strand, within BPHYT_RS26680 at 1555.240 kb on + strand, within BPHYT_RS26680 at 1555.889 kb on - strand at 1555.913 kb on - strand at 1556.172 kb on + strand, within BPHYT_RS26685 at 1556.313 kb on + strand, within BPHYT_RS26685 at 1556.611 kb on + strand, within BPHYT_RS26690 at 1556.854 kb on + strand, within BPHYT_RS26690 at 1556.855 kb on - strand, within BPHYT_RS26690 at 1556.860 kb on + strand, within BPHYT_RS26690 at 1556.860 kb on + strand, within BPHYT_RS26690 at 1556.860 kb on + strand, within BPHYT_RS26690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,555,034 + BPHYT_RS26680 0.41 +2.1 1,555,035 - BPHYT_RS26680 0.41 +0.3 1,555,059 - BPHYT_RS26680 0.43 +0.5 1,555,147 + BPHYT_RS26680 0.49 +1.1 1,555,147 + BPHYT_RS26680 0.49 +1.7 1,555,240 + BPHYT_RS26680 0.55 -0.3 1,555,889 - -1.1 1,555,913 - -0.8 1,556,172 + BPHYT_RS26685 0.47 +0.4 1,556,313 + BPHYT_RS26685 0.69 +1.1 1,556,611 + BPHYT_RS26690 0.14 +0.9 1,556,854 + BPHYT_RS26690 0.48 -0.4 1,556,855 - BPHYT_RS26690 0.48 +0.7 1,556,860 + BPHYT_RS26690 0.48 +0.2 1,556,860 + BPHYT_RS26690 0.48 +0.6 1,556,860 + BPHYT_RS26690 0.48 +0.8
Or see this region's nucleotide sequence