Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26600

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,535,508	+				-0.8
1,535,547	+				-0.7
1,535,824	-		BPHYT_RS26595	0.47	-0.7
1,535,997	+		BPHYT_RS26595	0.71	-1.5
1,536,017	-		BPHYT_RS26595	0.74	-1.3
1,536,224	-				+1.5
1,536,771	-		BPHYT_RS26600	0.69	-0.8
1,537,013	-				+0.8
1,537,015	+				+2.2
1,537,208	-				-0.6
1,537,228	+				+0.8
1,537,228	+				+0.5
1,537,230	+				-0.7
1,537,230	+				+0.1
1,537,231	-				+0.4
1,537,231	-				-0.1
1,537,232	+				-1.0
1,537,233	-				+0.9
1,537,233	-				+1.0
1,537,305	+				-0.3
1,537,305	+				-0.3
1,537,306	-				-1.1
1,537,306	-				+0.9
1,537,306	-				+0.2
1,537,607	-				+0.5
1,537,676	+				-0.8
1,537,791	-				+1.5
1,537,824	-				+2.0
1,537,874	-		BPHYT_RS26610	0.11	+0.9
1,537,874	-		BPHYT_RS26610	0.11	+1.5
1,537,874	-		BPHYT_RS26610	0.11	-0.3
1,537,901	-		BPHYT_RS26610	0.13	-0.1