Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26585

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26580 and BPHYT_RS26585 are separated by 447 nucleotidesBPHYT_RS26585 and BPHYT_RS26590 are separated by 92 nucleotidesBPHYT_RS26590 and BPHYT_RS26595 are separated by 94 nucleotides BPHYT_RS26580: BPHYT_RS26580 - hypothetical protein, at 1,531,646 to 1,532,545 _RS26580 BPHYT_RS26585: BPHYT_RS26585 - trehalase, at 1,532,993 to 1,534,666 _RS26585 BPHYT_RS26590: BPHYT_RS26590 - DNA-3-methyladenine glycosylase, at 1,534,759 to 1,535,379 _RS26590 BPHYT_RS26595: BPHYT_RS26595 - carbonic anhydrase, at 1,535,474 to 1,536,211 _RS26595 Position (kb) 1532 1533 1534 1535Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1532.630 kb on - strandat 1532.694 kb on + strandat 1532.738 kb on + strandat 1532.738 kb on + strandat 1532.822 kb on + strandat 1532.822 kb on + strandat 1532.822 kb on + strandat 1533.347 kb on + strand, within BPHYT_RS26585at 1533.348 kb on - strand, within BPHYT_RS26585at 1533.539 kb on + strand, within BPHYT_RS26585at 1533.774 kb on - strand, within BPHYT_RS26585at 1533.954 kb on - strand, within BPHYT_RS26585at 1534.187 kb on + strand, within BPHYT_RS26585at 1534.208 kb on + strand, within BPHYT_RS26585at 1534.374 kb on - strand, within BPHYT_RS26585at 1534.514 kb on + strandat 1534.514 kb on + strandat 1534.938 kb on + strand, within BPHYT_RS26590at 1534.957 kb on + strand, within BPHYT_RS26590at 1534.957 kb on + strand, within BPHYT_RS26590at 1534.958 kb on - strand, within BPHYT_RS26590at 1535.091 kb on + strand, within BPHYT_RS26590at 1535.092 kb on - strand, within BPHYT_RS26590at 1535.285 kb on - strand, within BPHYT_RS26590at 1535.285 kb on - strand, within BPHYT_RS26590at 1535.508 kb on + strandat 1535.547 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
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1,532,630 - -0.5
1,532,694 + +0.4
1,532,738 + -1.8
1,532,738 + +2.1
1,532,822 + +0.8
1,532,822 + +2.1
1,532,822 + +1.1
1,533,347 + BPHYT_RS26585 0.21 +2.8
1,533,348 - BPHYT_RS26585 0.21 -0.3
1,533,539 + BPHYT_RS26585 0.33 +1.0
1,533,774 - BPHYT_RS26585 0.47 +1.1
1,533,954 - BPHYT_RS26585 0.57 +1.0
1,534,187 + BPHYT_RS26585 0.71 +0.4
1,534,208 + BPHYT_RS26585 0.73 -0.2
1,534,374 - BPHYT_RS26585 0.82 -1.8
1,534,514 + -0.8
1,534,514 + -1.5
1,534,938 + BPHYT_RS26590 0.29 +0.3
1,534,957 + BPHYT_RS26590 0.32 -0.2
1,534,957 + BPHYT_RS26590 0.32 -0.9
1,534,958 - BPHYT_RS26590 0.32 +4.9
1,535,091 + BPHYT_RS26590 0.53 -1.0
1,535,092 - BPHYT_RS26590 0.54 -0.4
1,535,285 - BPHYT_RS26590 0.85 -0.5
1,535,285 - BPHYT_RS26590 0.85 +0.3
1,535,508 + -0.8
1,535,547 + -0.7

Or see this region's nucleotide sequence