Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26040 and BPHYT_RS26045 are separated by 61 nucleotides BPHYT_RS26045 and BPHYT_RS26050 are separated by 1 nucleotides BPHYT_RS26050 and BPHYT_RS26055 are separated by 40 nucleotides
BPHYT_RS26040: BPHYT_RS26040 - cysteine hydrolase, at 1,417,420 to 1,418,112
_RS26040
BPHYT_RS26045: BPHYT_RS26045 - ABC transporter permease, at 1,418,174 to 1,419,091
_RS26045
BPHYT_RS26050: BPHYT_RS26050 - ABC transporter permease, at 1,419,093 to 1,420,208
_RS26050
BPHYT_RS26055: BPHYT_RS26055 - ABC transporter substrate-binding protein, at 1,420,249 to 1,421,346
_RS26055
Position (kb) 1419
1420
1421 Strain fitness (log2 ratio) -1
0
1 at 1418.118 kb on - strand at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.278 kb on - strand, within BPHYT_RS26045 at 1418.284 kb on - strand, within BPHYT_RS26045 at 1419.092 kb on - strand at 1419.092 kb on - strand at 1419.365 kb on - strand, within BPHYT_RS26050 at 1419.878 kb on + strand, within BPHYT_RS26050 at 1419.879 kb on - strand, within BPHYT_RS26050 at 1420.280 kb on + strand at 1420.548 kb on - strand, within BPHYT_RS26055 at 1420.584 kb on - strand, within BPHYT_RS26055 at 1420.935 kb on - strand, within BPHYT_RS26055
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,418,118 - -0.2 1,418,278 - BPHYT_RS26045 0.11 -0.4 1,418,278 - BPHYT_RS26045 0.11 -0.8 1,418,284 - BPHYT_RS26045 0.12 -0.2 1,419,092 - +0.9 1,419,092 - +0.4 1,419,365 - BPHYT_RS26050 0.24 -0.4 1,419,878 + BPHYT_RS26050 0.70 +0.1 1,419,879 - BPHYT_RS26050 0.70 -0.7 1,420,280 + +0.0 1,420,548 - BPHYT_RS26055 0.27 -1.6 1,420,584 - BPHYT_RS26055 0.31 -0.6 1,420,935 - BPHYT_RS26055 0.62 +0.4
Or see this region's nucleotide sequence