Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25950

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,396,966	+				-0.5
1,397,199	+				+0.2
1,397,200	-				-1.0
1,397,241	+				-0.8
1,397,652	-		BPHYT_RS25950	0.21	-2.1
1,397,745	+		BPHYT_RS25950	0.27	-1.3
1,397,776	+		BPHYT_RS25950	0.29	-1.9
1,398,719	-				+0.1
1,398,719	-				-0.3
1,398,957	+				+4.5
1,398,958	-		BPHYT_RS25955	0.22	-0.8
1,399,622	-				+0.2