Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24715

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,111,806	-				-0.6
1,112,300	+				+0.8
1,112,300	+				+0.2
1,112,395	+				-0.4
1,112,396	-				+2.3
1,112,418	-				-1.0
1,112,428	+				-1.1
1,112,429	-				+0.9
1,112,450	+				+0.2
1,112,451	-				+1.4
1,112,503	+				-0.1
1,112,706	+		BPHYT_RS24715	0.17	+0.1
1,113,192	+				+0.1
1,113,192	+				-0.2
1,113,193	-				+0.8
1,113,364	+				+0.6
1,113,364	+				-0.4
1,113,365	-				+1.2
1,113,365	-				+0.1
1,113,365	-				-0.6
1,113,365	-				+1.4
1,113,365	-				+0.2
1,113,577	+				-0.4
1,113,727	-		BPHYT_RS24725	0.14	-1.8
1,113,911	-		BPHYT_RS24725	0.34	-0.5
1,114,066	+		BPHYT_RS24725	0.51	-0.6
1,114,067	-		BPHYT_RS24725	0.51	-0.1
1,114,086	+		BPHYT_RS24725	0.53	+0.8
1,114,087	-		BPHYT_RS24725	0.53	-1.0