Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24600

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,088,708	+		BPHYT_RS24595	0.68	-0.1
1,088,708	+		BPHYT_RS24595	0.68	+1.8
1,089,164	+		BPHYT_RS24595	0.85	-1.0
1,089,336	-				-0.9
1,089,633	+				-0.9
1,089,919	+		BPHYT_RS24600	0.37	+1.4
1,089,920	-		BPHYT_RS24600	0.38	+2.1
1,089,931	+		BPHYT_RS24600	0.39	-0.3
1,090,177	+		BPHYT_RS24600	0.72	+1.7
1,090,434	-				-4.6
1,090,434	-				+0.0
1,090,701	+		BPHYT_RS24605	0.26	+1.3
1,090,702	-		BPHYT_RS24605	0.26	-0.3
1,090,804	-		BPHYT_RS24605	0.34	-0.1
1,090,804	-		BPHYT_RS24605	0.34	-0.3
1,090,809	+		BPHYT_RS24605	0.34	-0.6
1,090,972	-		BPHYT_RS24605	0.47	+0.4
1,091,010	-		BPHYT_RS24605	0.50	-1.1
1,091,194	-		BPHYT_RS24605	0.65	-0.1
1,091,343	+		BPHYT_RS24605	0.76	-0.3
1,091,344	-		BPHYT_RS24605	0.77	+0.9