Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24450

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,053,592	-		BPHYT_RS24445	0.86	-1.2
1,053,646	+		BPHYT_RS24445	0.87	-0.1
1,053,647	-		BPHYT_RS24445	0.87	+0.1
1,054,055	-				+0.3
1,054,070	+				+0.5
1,054,071	-				+0.7
1,054,147	+				-1.4
1,054,225	+				+1.1
1,054,382	-				-1.9
1,054,425	+				+0.4
1,054,425	+				-0.1
1,054,521	+		BPHYT_RS24450	0.13	+0.7
1,054,522	-		BPHYT_RS24450	0.14	+1.1
1,054,529	-		BPHYT_RS24450	0.14	+0.3
1,054,609	+		BPHYT_RS24450	0.24	+0.3
1,054,619	-		BPHYT_RS24450	0.25	+3.6
1,054,744	+		BPHYT_RS24450	0.40	+2.0
1,054,849	-		BPHYT_RS24450	0.52	+0.5
1,054,998	-		BPHYT_RS24450	0.70	-0.9
1,055,114	+		BPHYT_RS24450	0.84	-0.2
1,055,133	-		BPHYT_RS24450	0.86	+0.4
1,055,163	+		BPHYT_RS24450	0.89	+2.4
1,055,166	+		BPHYT_RS24450	0.90	+0.3
1,055,166	+		BPHYT_RS24450	0.90	+0.7
1,055,178	+				+0.7
1,055,190	+				+0.0
1,055,239	-				+0.7
1,055,242	-				+0.2
1,055,281	+				+0.1
1,055,289	-				-0.3
1,055,335	+				-1.4
1,056,074	+		BPHYT_RS24455	0.74	-0.6
1,056,246	-				-0.5