Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24445

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,049,450	-		BPHYT_RS24440	0.16	-0.0
1,049,807	+		BPHYT_RS24440	0.52	-0.5
1,050,054	-		BPHYT_RS24440	0.77	+0.5
1,050,054	-		BPHYT_RS24440	0.77	-0.5
1,051,105	-		BPHYT_RS24445	0.21	+0.2
1,051,385	-		BPHYT_RS24445	0.29	+2.2
1,051,386	+		BPHYT_RS24445	0.29	+0.4
1,051,387	-		BPHYT_RS24445	0.29	+0.3
1,051,624	-		BPHYT_RS24445	0.35	+0.6
1,051,759	-		BPHYT_RS24445	0.38	+1.2
1,051,844	-		BPHYT_RS24445	0.40	-0.0
1,051,844	-		BPHYT_RS24445	0.40	+0.7
1,051,905	+		BPHYT_RS24445	0.42	-2.9
1,052,163	+		BPHYT_RS24445	0.49	+0.6
1,052,164	-		BPHYT_RS24445	0.49	-0.1
1,052,310	+		BPHYT_RS24445	0.52	+0.4
1,052,311	-		BPHYT_RS24445	0.52	+1.4
1,052,328	+		BPHYT_RS24445	0.53	-0.9
1,052,329	-		BPHYT_RS24445	0.53	-1.1
1,052,364	+		BPHYT_RS24445	0.54	-0.7
1,052,365	-		BPHYT_RS24445	0.54	-0.2
1,052,542	-		BPHYT_RS24445	0.58	+0.6
1,052,542	-		BPHYT_RS24445	0.58	+0.6
1,052,823	+		BPHYT_RS24445	0.66	+1.0
1,052,936	-		BPHYT_RS24445	0.69	+0.2
1,053,036	+		BPHYT_RS24445	0.71	+1.0
1,053,217	-		BPHYT_RS24445	0.76	-0.3
1,053,306	+		BPHYT_RS24445	0.78	+2.2
1,053,378	+		BPHYT_RS24445	0.80	+0.7
1,053,379	-		BPHYT_RS24445	0.80	-1.5
1,053,592	-		BPHYT_RS24445	0.86	-1.2
1,053,646	+		BPHYT_RS24445	0.87	-0.1
1,053,647	-		BPHYT_RS24445	0.87	+0.1
1,054,055	-				+0.3
1,054,070	+				+0.5
1,054,071	-				+0.7
1,054,147	+				-1.4
1,054,225	+				+1.1
1,054,382	-				-1.9
1,054,425	+				+0.4
1,054,425	+				-0.1
1,054,521	+		BPHYT_RS24450	0.13	+0.7
1,054,522	-		BPHYT_RS24450	0.14	+1.1
1,054,529	-		BPHYT_RS24450	0.14	+0.3
1,054,609	+		BPHYT_RS24450	0.24	+0.3
1,054,619	-		BPHYT_RS24450	0.25	+3.6
1,054,744	+		BPHYT_RS24450	0.40	+2.0
1,054,849	-		BPHYT_RS24450	0.52	+0.5
1,054,998	-		BPHYT_RS24450	0.70	-0.9
1,055,114	+		BPHYT_RS24450	0.84	-0.2
1,055,133	-		BPHYT_RS24450	0.86	+0.4