Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24390 and BPHYT_RS24395 are separated by 36 nucleotides BPHYT_RS24395 and BPHYT_RS24400 are separated by 14 nucleotides BPHYT_RS24400 and BPHYT_RS24405 are separated by 77 nucleotides BPHYT_RS24405 and BPHYT_RS24410 are separated by 85 nucleotides
BPHYT_RS24390: BPHYT_RS24390 - hypothetical protein, at 1,037,475 to 1,038,122
_RS24390
BPHYT_RS24395: BPHYT_RS24395 - type VI secretion protein, at 1,038,159 to 1,038,707
_RS24395
BPHYT_RS24400: BPHYT_RS24400 - EvpB family type VI secretion protein, at 1,038,722 to 1,040,212
_RS24400
BPHYT_RS24405: BPHYT_RS24405 - type VI secretion system effector, at 1,040,290 to 1,040,793
_RS24405
BPHYT_RS24410: BPHYT_RS24410 - type VI secretion protein, at 1,040,879 to 1,041,358
_RS24410
Position (kb) 1038
1039
1040
1041 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1038.225 kb on + strand, within BPHYT_RS24395 at 1038.225 kb on + strand, within BPHYT_RS24395 at 1038.225 kb on + strand, within BPHYT_RS24395 at 1038.705 kb on + strand at 1038.706 kb on - strand at 1038.818 kb on - strand at 1039.028 kb on + strand, within BPHYT_RS24400 at 1039.028 kb on + strand, within BPHYT_RS24400 at 1039.028 kb on + strand, within BPHYT_RS24400 at 1039.028 kb on + strand, within BPHYT_RS24400 at 1039.029 kb on - strand at 1039.157 kb on + strand, within BPHYT_RS24400 at 1039.158 kb on - strand, within BPHYT_RS24400 at 1039.158 kb on - strand, within BPHYT_RS24400 at 1039.158 kb on - strand, within BPHYT_RS24400 at 1039.158 kb on - strand, within BPHYT_RS24400 at 1039.244 kb on + strand, within BPHYT_RS24400 at 1039.245 kb on - strand, within BPHYT_RS24400 at 1039.430 kb on + strand, within BPHYT_RS24400 at 1039.430 kb on + strand, within BPHYT_RS24400 at 1039.547 kb on + strand, within BPHYT_RS24400 at 1039.547 kb on + strand, within BPHYT_RS24400 at 1039.558 kb on + strand, within BPHYT_RS24400 at 1039.845 kb on - strand, within BPHYT_RS24400 at 1039.895 kb on + strand, within BPHYT_RS24400 at 1040.013 kb on - strand, within BPHYT_RS24400 at 1040.230 kb on - strand at 1040.302 kb on + strand at 1040.303 kb on - strand at 1040.307 kb on - strand at 1040.507 kb on - strand, within BPHYT_RS24405 at 1040.590 kb on + strand, within BPHYT_RS24405 at 1040.591 kb on - strand, within BPHYT_RS24405 at 1040.612 kb on - strand, within BPHYT_RS24405 at 1040.612 kb on - strand, within BPHYT_RS24405 at 1040.683 kb on + strand, within BPHYT_RS24405 at 1040.782 kb on + strand at 1041.083 kb on + strand, within BPHYT_RS24410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 1,038,225 + BPHYT_RS24395 0.12 -0.4 1,038,225 + BPHYT_RS24395 0.12 -0.7 1,038,225 + BPHYT_RS24395 0.12 +0.2 1,038,705 + +0.1 1,038,706 - -2.0 1,038,818 - +1.4 1,039,028 + BPHYT_RS24400 0.21 +1.3 1,039,028 + BPHYT_RS24400 0.21 +0.2 1,039,028 + BPHYT_RS24400 0.21 +0.5 1,039,028 + BPHYT_RS24400 0.21 +0.4 1,039,029 - +0.9 1,039,157 + BPHYT_RS24400 0.29 +0.7 1,039,158 - BPHYT_RS24400 0.29 +2.3 1,039,158 - BPHYT_RS24400 0.29 +0.9 1,039,158 - BPHYT_RS24400 0.29 +0.1 1,039,158 - BPHYT_RS24400 0.29 +0.4 1,039,244 + BPHYT_RS24400 0.35 +3.0 1,039,245 - BPHYT_RS24400 0.35 +0.9 1,039,430 + BPHYT_RS24400 0.47 +0.8 1,039,430 + BPHYT_RS24400 0.47 -0.6 1,039,547 + BPHYT_RS24400 0.55 +0.3 1,039,547 + BPHYT_RS24400 0.55 -0.9 1,039,558 + BPHYT_RS24400 0.56 +0.5 1,039,845 - BPHYT_RS24400 0.75 -1.3 1,039,895 + BPHYT_RS24400 0.79 +0.8 1,040,013 - BPHYT_RS24400 0.87 -0.6 1,040,230 - +0.8 1,040,302 + +1.9 1,040,303 - +0.9 1,040,307 - +2.6 1,040,507 - BPHYT_RS24405 0.43 +0.8 1,040,590 + BPHYT_RS24405 0.60 +0.4 1,040,591 - BPHYT_RS24405 0.60 -0.6 1,040,612 - BPHYT_RS24405 0.64 -0.9 1,040,612 - BPHYT_RS24405 0.64 -0.1 1,040,683 + BPHYT_RS24405 0.78 -1.0 1,040,782 + +0.4 1,041,083 + BPHYT_RS24410 0.42 -0.5
Or see this region's nucleotide sequence