Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24295

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
1,016,423	+		BPHYT_RS24290	0.87	-0.1
1,016,423	+		BPHYT_RS24290	0.87	-2.4
1,016,424	-		BPHYT_RS24290	0.87	+0.1
1,016,424	-		BPHYT_RS24290	0.87	-0.2
1,016,424	-		BPHYT_RS24290	0.87	+0.1
1,016,445	+				-1.7
1,016,445	+				-1.5
1,016,446	-				+0.1
1,016,704	-				-2.8
1,016,704	-				+0.2
1,016,706	+				-1.6
1,016,706	+				-0.3
1,016,707	-				-0.9
1,016,707	-				+0.1
1,016,943	+				-0.6
1,017,302	+		BPHYT_RS24295	0.60	+0.2
1,018,237	+				-0.4
1,018,290	+				-0.3
1,018,383	-				-1.2
1,018,383	-				-0.3
1,018,411	-				-0.5
1,018,411	-				+0.7
1,018,411	-				+1.1
1,018,418	+				+0.9
1,018,484	+		BPHYT_RS24305	0.20	-0.2