Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24120

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24115 and BPHYT_RS24120 are separated by 29 nucleotidesBPHYT_RS24120 and BPHYT_RS24125 are separated by 164 nucleotides BPHYT_RS24115: BPHYT_RS24115 - epimerase, at 976,468 to 977,304 _RS24115 BPHYT_RS24120: BPHYT_RS24120 - hexuronate transporter ExuT, at 977,334 to 978,626 _RS24120 BPHYT_RS24125: BPHYT_RS24125 - endopolygalacturonase, at 978,791 to 980,806 _RS24125 Position (kb) 977 978 979Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 976.505 kb on + strandat 976.505 kb on + strandat 976.586 kb on + strand, within BPHYT_RS24115at 977.058 kb on - strand, within BPHYT_RS24115at 977.503 kb on - strand, within BPHYT_RS24120at 977.837 kb on - strand, within BPHYT_RS24120at 978.087 kb on + strand, within BPHYT_RS24120at 978.184 kb on - strand, within BPHYT_RS24120at 978.370 kb on - strand, within BPHYT_RS24120at 978.725 kb on - strandat 978.725 kb on - strandat 978.876 kb on + strandat 979.348 kb on + strand, within BPHYT_RS24125

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
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976,505 + +0.6
976,505 + -0.3
976,586 + BPHYT_RS24115 0.14 -0.3
977,058 - BPHYT_RS24115 0.70 -1.9
977,503 - BPHYT_RS24120 0.13 +5.0
977,837 - BPHYT_RS24120 0.39 +1.0
978,087 + BPHYT_RS24120 0.58 -0.3
978,184 - BPHYT_RS24120 0.66 -0.4
978,370 - BPHYT_RS24120 0.80 +0.5
978,725 - -0.1
978,725 - +0.3
978,876 + -0.4
979,348 + BPHYT_RS24125 0.28 -0.4

Or see this region's nucleotide sequence