Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23170

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23165 and BPHYT_RS23170 are separated by 971 nucleotidesBPHYT_RS23170 and BPHYT_RS23175 are separated by 115 nucleotides BPHYT_RS23165: BPHYT_RS23165 - glutamine amidotransferase, at 763,476 to 764,270 _RS23165 BPHYT_RS23170: BPHYT_RS23170 - XRE family transcriptional regulator, at 765,242 to 765,793 _RS23170 BPHYT_RS23175: BPHYT_RS23175 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 765,909 to 767,402 _RS23175 Position (kb) 765 766Strain fitness (log2 ratio) -1 0 1at 764.979 kb on - strandat 765.515 kb on + strand, within BPHYT_RS23170at 765.699 kb on - strand, within BPHYT_RS23170at 766.668 kb on + strand, within BPHYT_RS23175

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
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764,979 - +0.6
765,515 + BPHYT_RS23170 0.49 +1.3
765,699 - BPHYT_RS23170 0.83 +0.9
766,668 + BPHYT_RS23175 0.51 -0.3

Or see this region's nucleotide sequence