Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22870 and BPHYT_RS22875 are separated by 314 nucleotides BPHYT_RS22875 and BPHYT_RS22880 are separated by 86 nucleotides BPHYT_RS22880 and BPHYT_RS22885 are separated by 387 nucleotides
BPHYT_RS22870: BPHYT_RS22870 - copper transporter, at 688,891 to 690,564
_RS22870
BPHYT_RS22875: BPHYT_RS22875 - hypothetical protein, at 690,879 to 692,795
_RS22875
BPHYT_RS22880: BPHYT_RS22880 - hypothetical protein, at 692,882 to 693,214
_RS22880
BPHYT_RS22885: BPHYT_RS22885 - hypothetical protein, at 693,602 to 694,387
_RS22885
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -2
-1
0
1 at 690.555 kb on + strand at 690.764 kb on - strand at 690.842 kb on - strand at 690.910 kb on + strand at 691.230 kb on + strand, within BPHYT_RS22875 at 691.623 kb on + strand, within BPHYT_RS22875 at 692.280 kb on + strand, within BPHYT_RS22875 at 692.472 kb on + strand, within BPHYT_RS22875 at 692.621 kb on + strand at 692.621 kb on + strand at 692.636 kb on + strand at 692.639 kb on + strand at 692.697 kb on + strand at 692.698 kb on - strand at 692.754 kb on + strand at 692.755 kb on - strand at 692.901 kb on + strand at 692.901 kb on + strand at 692.902 kb on - strand at 693.029 kb on + strand, within BPHYT_RS22880 at 693.035 kb on + strand, within BPHYT_RS22880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 690,555 + +1.5 690,764 - -0.5 690,842 - +1.1 690,910 + -0.6 691,230 + BPHYT_RS22875 0.18 -0.4 691,623 + BPHYT_RS22875 0.39 -1.1 692,280 + BPHYT_RS22875 0.73 -0.7 692,472 + BPHYT_RS22875 0.83 -0.7 692,621 + -0.2 692,621 + -0.1 692,636 + +1.6 692,639 + -0.5 692,697 + +1.5 692,698 - -0.1 692,754 + +0.7 692,755 - -1.4 692,901 + +0.4 692,901 + -2.0 692,902 - -0.1 693,029 + BPHYT_RS22880 0.44 -1.0 693,035 + BPHYT_RS22880 0.46 +0.8
Or see this region's nucleotide sequence