Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22675 and BPHYT_RS22680 are separated by 318 nucleotides BPHYT_RS22680 and BPHYT_RS22685 overlap by 4 nucleotides BPHYT_RS22685 and BPHYT_RS22690 are separated by 49 nucleotides
BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184
_RS22675
BPHYT_RS22680: BPHYT_RS22680 - 3-dehydroquinate dehydratase, at 644,503 to 644,958
_RS22680
BPHYT_RS22685: BPHYT_RS22685 - shikimate 5-dehydrogenase, at 644,955 to 645,869
_RS22685
BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295
_RS22690
Position (kb) 644
645 Strain fitness (log2 ratio) -2
-1
0
1 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.748 kb on + strand, within BPHYT_RS22680 at 644.809 kb on - strand, within BPHYT_RS22680 at 644.851 kb on + strand, within BPHYT_RS22680 at 644.902 kb on + strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.906 kb on + strand, within BPHYT_RS22680 at 644.907 kb on - strand, within BPHYT_RS22680 at 644.938 kb on - strand at 645.225 kb on + strand, within BPHYT_RS22685 at 645.225 kb on + strand, within BPHYT_RS22685 at 645.696 kb on + strand, within BPHYT_RS22685
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 644,575 + BPHYT_RS22680 0.16 -0.6 644,575 + BPHYT_RS22680 0.16 +0.4 644,748 + BPHYT_RS22680 0.54 +0.3 644,809 - BPHYT_RS22680 0.67 -0.7 644,851 + BPHYT_RS22680 0.76 +0.4 644,902 + BPHYT_RS22680 0.88 -0.9 644,903 - BPHYT_RS22680 0.88 -2.2 644,903 - BPHYT_RS22680 0.88 -2.0 644,903 - BPHYT_RS22680 0.88 -0.2 644,906 + BPHYT_RS22680 0.88 -0.8 644,907 - BPHYT_RS22680 0.89 -0.6 644,938 - -1.9 645,225 + BPHYT_RS22685 0.30 -0.2 645,225 + BPHYT_RS22685 0.30 -1.0 645,696 + BPHYT_RS22685 0.81 -1.2
Or see this region's nucleotide sequence