Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22620 and BPHYT_RS22625 are separated by 156 nucleotides BPHYT_RS22625 and BPHYT_RS22630 are separated by 398 nucleotides
BPHYT_RS22620: BPHYT_RS22620 - MFS transporter, at 630,539 to 632,014
_RS22620
BPHYT_RS22625: BPHYT_RS22625 - MFS transporter, at 632,171 to 633,472
_RS22625
BPHYT_RS22630: BPHYT_RS22630 - transcriptional regulator, at 633,871 to 634,611
_RS22630
Position (kb) 632
633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 631.289 kb on + strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.752 kb on - strand, within BPHYT_RS22620 at 631.843 kb on - strand, within BPHYT_RS22620 at 631.925 kb on + strand at 631.926 kb on - strand at 632.026 kb on + strand at 632.027 kb on - strand at 632.027 kb on - strand at 632.241 kb on + strand at 632.241 kb on + strand at 632.242 kb on - strand at 632.242 kb on - strand at 632.317 kb on - strand, within BPHYT_RS22625 at 632.431 kb on - strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.830 kb on - strand, within BPHYT_RS22625 at 632.988 kb on + strand, within BPHYT_RS22625 at 632.989 kb on - strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.120 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.317 kb on + strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.318 kb on - strand, within BPHYT_RS22625 at 633.507 kb on + strand at 633.508 kb on - strand at 633.508 kb on - strand at 633.520 kb on + strand at 633.664 kb on + strand at 633.665 kb on - strand at 633.751 kb on + strand at 633.791 kb on - strand at 633.794 kb on + strand at 633.795 kb on - strand at 633.800 kb on - strand at 633.853 kb on + strand at 633.858 kb on + strand at 633.859 kb on - strand at 633.859 kb on - strand at 633.876 kb on + strand at 633.876 kb on + strand at 633.959 kb on - strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.232 kb on - strand, within BPHYT_RS22630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 631,289 + BPHYT_RS22620 0.51 +0.4 631,290 - BPHYT_RS22620 0.51 +0.3 631,290 - BPHYT_RS22620 0.51 +0.7 631,752 - BPHYT_RS22620 0.82 -0.8 631,843 - BPHYT_RS22620 0.88 +0.2 631,925 + +2.3 631,926 - +1.0 632,026 + -1.2 632,027 - -1.3 632,027 - +0.7 632,241 + -1.9 632,241 + +1.9 632,242 - +0.9 632,242 - -1.8 632,317 - BPHYT_RS22625 0.11 -1.5 632,431 - BPHYT_RS22625 0.20 -1.1 632,481 + BPHYT_RS22625 0.24 +3.3 632,481 + BPHYT_RS22625 0.24 -2.2 632,482 - BPHYT_RS22625 0.24 +0.3 632,482 - BPHYT_RS22625 0.24 +0.0 632,482 - BPHYT_RS22625 0.24 +1.7 632,485 - BPHYT_RS22625 0.24 -0.6 632,485 - BPHYT_RS22625 0.24 -0.6 632,830 - BPHYT_RS22625 0.51 +0.2 632,988 + BPHYT_RS22625 0.63 +0.4 632,989 - BPHYT_RS22625 0.63 -0.8 633,120 + BPHYT_RS22625 0.73 -0.2 633,120 + BPHYT_RS22625 0.73 -1.4 633,317 + BPHYT_RS22625 0.88 +0.4 633,317 + BPHYT_RS22625 0.88 +0.3 633,318 - BPHYT_RS22625 0.88 -0.4 633,318 - BPHYT_RS22625 0.88 +1.1 633,507 + -0.8 633,508 - -0.4 633,508 - -0.2 633,520 + +1.3 633,664 + +1.7 633,665 - -1.0 633,751 + -3.0 633,791 - -1.2 633,794 + +1.2 633,795 - -0.1 633,800 - -1.5 633,853 + -0.5 633,858 + +0.3 633,859 - +0.1 633,859 - -2.6 633,876 + +0.3 633,876 + -2.7 633,959 - BPHYT_RS22630 0.12 -0.6 634,165 + BPHYT_RS22630 0.40 +1.8 634,165 + BPHYT_RS22630 0.40 +1.3 634,232 - BPHYT_RS22630 0.49 -0.5
Or see this region's nucleotide sequence