Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22395 and BPHYT_RS22400 are separated by 181 nucleotides BPHYT_RS22400 and BPHYT_RS22405 are separated by 57 nucleotides BPHYT_RS22405 and BPHYT_RS22410 are separated by 70 nucleotides BPHYT_RS22410 and BPHYT_RS22415 overlap by 4 nucleotides
BPHYT_RS22395: BPHYT_RS22395 - AraC family transcriptional regulator, at 580,497 to 581,450
_RS22395
BPHYT_RS22400: BPHYT_RS22400 - hypothetical protein, at 581,632 to 581,958
_RS22400
BPHYT_RS22405: BPHYT_RS22405 - HxlR family transcriptional regulator, at 582,016 to 582,417
_RS22405
BPHYT_RS22410: BPHYT_RS22410 - hypothetical protein, at 582,488 to 582,913
_RS22410
BPHYT_RS22415: BPHYT_RS22415 - nitrite reductase, at 582,910 to 584,700
_RS22415
Position (kb) 581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 580.743 kb on + strand, within BPHYT_RS22395 at 580.743 kb on + strand, within BPHYT_RS22395 at 580.958 kb on + strand, within BPHYT_RS22395 at 581.275 kb on - strand, within BPHYT_RS22395 at 581.547 kb on - strand at 581.548 kb on + strand at 581.552 kb on + strand at 581.553 kb on - strand at 581.553 kb on - strand at 581.562 kb on + strand at 581.794 kb on + strand, within BPHYT_RS22400 at 581.926 kb on + strand at 581.944 kb on - strand at 581.975 kb on + strand at 581.975 kb on + strand at 581.976 kb on - strand at 581.979 kb on - strand at 582.006 kb on - strand at 582.017 kb on + strand at 582.417 kb on + strand at 582.538 kb on + strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.539 kb on - strand, within BPHYT_RS22410 at 582.552 kb on + strand, within BPHYT_RS22410 at 582.721 kb on - strand, within BPHYT_RS22410 at 582.733 kb on - strand, within BPHYT_RS22410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 580,743 + BPHYT_RS22395 0.26 -0.2 580,743 + BPHYT_RS22395 0.26 -0.7 580,958 + BPHYT_RS22395 0.48 +0.0 581,275 - BPHYT_RS22395 0.82 +0.6 581,547 - -1.2 581,548 + -1.1 581,552 + +2.7 581,553 - -0.3 581,553 - +0.3 581,562 + -1.6 581,794 + BPHYT_RS22400 0.50 -2.3 581,926 + -0.2 581,944 - +0.6 581,975 + +0.8 581,975 + -1.1 581,976 - -0.3 581,979 - -0.4 582,006 - -1.5 582,017 + -0.4 582,417 + -0.2 582,538 + BPHYT_RS22410 0.12 -1.2 582,539 - BPHYT_RS22410 0.12 +0.5 582,539 - BPHYT_RS22410 0.12 -0.4 582,552 + BPHYT_RS22410 0.15 +0.6 582,721 - BPHYT_RS22410 0.55 -0.3 582,733 - BPHYT_RS22410 0.58 +0.4
Or see this region's nucleotide sequence