Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22055

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
502,836	+		BPHYT_RS22050	0.61	+0.4
503,118	+		BPHYT_RS22050	0.78	-1.0
503,640	+				+2.3
504,063	-		BPHYT_RS22055	0.71	-0.9
504,193	-				-0.4
504,263	+				-0.4
504,264	-				-0.1
504,266	-				-1.2
504,266	-				-0.1
504,266	-				-0.2
504,270	-				+0.3
504,270	-				+0.8
504,274	-				+0.1
504,358	-				-1.0
504,358	-				+0.1
504,441	-				+0.2
504,494	-				+1.7
504,544	-				-0.0
504,812	+				-1.1
504,813	-				-0.2
504,813	-				+2.3
504,813	-				+0.5
505,145	+				-0.3
505,146	-				+0.2
505,146	-				+0.5