Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21215 and BPHYT_RS21220 are separated by 403 nucleotides BPHYT_RS21220 and BPHYT_RS21225 are separated by 289 nucleotides
BPHYT_RS21215: BPHYT_RS21215 - Crp/Fnr family transcriptional regulator, at 322,022 to 322,678
_RS21215
BPHYT_RS21220: BPHYT_RS21220 - universal stress protein A, at 323,082 to 323,549
_RS21220
BPHYT_RS21225: BPHYT_RS21225 - GntR family transcriptional regulator, at 323,839 to 324,528
_RS21225
Position (kb) 323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.324 kb on + strand, within BPHYT_RS21215 at 322.325 kb on - strand, within BPHYT_RS21215 at 322.325 kb on - strand, within BPHYT_RS21215 at 322.545 kb on + strand, within BPHYT_RS21215 at 322.546 kb on - strand, within BPHYT_RS21215 at 322.546 kb on - strand, within BPHYT_RS21215 at 322.575 kb on + strand, within BPHYT_RS21215 at 322.813 kb on + strand at 322.813 kb on + strand at 322.813 kb on + strand at 322.845 kb on + strand at 322.846 kb on - strand at 322.991 kb on + strand at 323.416 kb on + strand, within BPHYT_RS21220 at 323.416 kb on + strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.417 kb on - strand, within BPHYT_RS21220 at 323.440 kb on + strand, within BPHYT_RS21220 at 323.440 kb on + strand, within BPHYT_RS21220 at 323.441 kb on - strand, within BPHYT_RS21220 at 323.442 kb on + strand, within BPHYT_RS21220 at 323.442 kb on + strand, within BPHYT_RS21220 at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.545 kb on + strand at 323.546 kb on - strand at 323.546 kb on - strand at 323.627 kb on + strand at 323.627 kb on + strand at 323.628 kb on - strand at 323.628 kb on - strand at 323.670 kb on + strand at 323.914 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.270 kb on + strand, within BPHYT_RS21225 at 324.271 kb on - strand, within BPHYT_RS21225 at 324.271 kb on - strand, within BPHYT_RS21225
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 322,324 + BPHYT_RS21215 0.46 -0.5 322,324 + BPHYT_RS21215 0.46 -0.1 322,324 + BPHYT_RS21215 0.46 +1.3 322,324 + BPHYT_RS21215 0.46 +1.7 322,325 - BPHYT_RS21215 0.46 +1.6 322,325 - BPHYT_RS21215 0.46 +1.7 322,545 + BPHYT_RS21215 0.80 +2.7 322,546 - BPHYT_RS21215 0.80 +1.7 322,546 - BPHYT_RS21215 0.80 +3.3 322,575 + BPHYT_RS21215 0.84 -0.3 322,813 + -0.3 322,813 + +0.7 322,813 + +0.1 322,845 + +1.8 322,846 - +0.2 322,991 + -0.7 323,416 + BPHYT_RS21220 0.71 -0.6 323,416 + BPHYT_RS21220 0.71 +0.2 323,417 - BPHYT_RS21220 0.72 +0.3 323,417 - BPHYT_RS21220 0.72 +0.5 323,417 - BPHYT_RS21220 0.72 -1.4 323,440 + BPHYT_RS21220 0.76 -0.3 323,440 + BPHYT_RS21220 0.76 +1.5 323,441 - BPHYT_RS21220 0.77 +0.1 323,442 + BPHYT_RS21220 0.77 -0.4 323,442 + BPHYT_RS21220 0.77 -0.4 323,545 + -0.0 323,545 + +0.3 323,545 + +1.3 323,545 + +1.1 323,545 + +1.3 323,546 - -1.0 323,546 - -2.9 323,627 + +1.8 323,627 + +1.3 323,628 - +2.9 323,628 - +1.0 323,670 + -1.6 323,914 + BPHYT_RS21225 0.11 -0.1 324,270 + BPHYT_RS21225 0.62 +0.2 324,270 + BPHYT_RS21225 0.62 -0.6 324,270 + BPHYT_RS21225 0.62 -0.0 324,270 + BPHYT_RS21225 0.62 -0.7 324,271 - BPHYT_RS21225 0.63 +0.0 324,271 - BPHYT_RS21225 0.63 -0.7
Or see this region's nucleotide sequence