Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20810 and BPHYT_RS20815 are separated by 18 nucleotides BPHYT_RS20815 and BPHYT_RS20820 are separated by 7 nucleotides
BPHYT_RS20810: BPHYT_RS20810 - ABC transporter permease, at 231,584 to 232,549
_RS20810
BPHYT_RS20815: BPHYT_RS20815 - ABC transporter ATP-binding protein, at 232,568 to 234,067
_RS20815
BPHYT_RS20820: BPHYT_RS20820 - ABC transporter permease, at 234,075 to 235,034
_RS20820
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 232.142 kb on - strand, within BPHYT_RS20810 at 232.289 kb on + strand, within BPHYT_RS20810 at 232.290 kb on - strand, within BPHYT_RS20810 at 232.547 kb on + strand at 232.548 kb on - strand at 232.811 kb on + strand, within BPHYT_RS20815 at 232.811 kb on + strand, within BPHYT_RS20815 at 232.812 kb on - strand, within BPHYT_RS20815 at 232.974 kb on + strand, within BPHYT_RS20815 at 233.207 kb on + strand, within BPHYT_RS20815 at 233.309 kb on + strand, within BPHYT_RS20815 at 233.882 kb on + strand, within BPHYT_RS20815 at 233.882 kb on + strand, within BPHYT_RS20815 at 233.882 kb on + strand, within BPHYT_RS20815 at 233.883 kb on - strand, within BPHYT_RS20815 at 233.883 kb on - strand, within BPHYT_RS20815
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 232,142 - BPHYT_RS20810 0.58 -0.4 232,289 + BPHYT_RS20810 0.73 +0.1 232,290 - BPHYT_RS20810 0.73 +0.6 232,547 + -0.5 232,548 - -0.2 232,811 + BPHYT_RS20815 0.16 -0.5 232,811 + BPHYT_RS20815 0.16 -0.1 232,812 - BPHYT_RS20815 0.16 +0.5 232,974 + BPHYT_RS20815 0.27 -1.2 233,207 + BPHYT_RS20815 0.43 -1.1 233,309 + BPHYT_RS20815 0.49 -0.1 233,882 + BPHYT_RS20815 0.88 -1.1 233,882 + BPHYT_RS20815 0.88 +0.1 233,882 + BPHYT_RS20815 0.88 +6.6 233,883 - BPHYT_RS20815 0.88 +0.4 233,883 - BPHYT_RS20815 0.88 -0.9
Or see this region's nucleotide sequence