Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20480 and BPHYT_RS20485 are separated by 200 nucleotides BPHYT_RS20485 and BPHYT_RS20490 are separated by 327 nucleotides
BPHYT_RS20480: BPHYT_RS20480 - hypothetical protein, at 156,492 to 157,259
_RS20480
BPHYT_RS20485: BPHYT_RS20485 - chemotaxis protein, at 157,460 to 159,007
_RS20485
BPHYT_RS20490: BPHYT_RS20490 - porin, at 159,335 to 160,393
_RS20490
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 156.711 kb on + strand, within BPHYT_RS20480 at 156.712 kb on - strand, within BPHYT_RS20480 at 156.861 kb on + strand, within BPHYT_RS20480 at 156.861 kb on + strand, within BPHYT_RS20480 at 156.862 kb on - strand, within BPHYT_RS20480 at 156.862 kb on - strand, within BPHYT_RS20480 at 156.975 kb on + strand, within BPHYT_RS20480 at 156.975 kb on + strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 156.982 kb on - strand, within BPHYT_RS20480 at 157.071 kb on + strand, within BPHYT_RS20480 at 157.072 kb on - strand, within BPHYT_RS20480 at 157.134 kb on + strand, within BPHYT_RS20480 at 157.660 kb on + strand, within BPHYT_RS20485 at 157.660 kb on + strand, within BPHYT_RS20485 at 157.707 kb on + strand, within BPHYT_RS20485 at 157.728 kb on - strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.835 kb on + strand, within BPHYT_RS20485 at 157.952 kb on + strand, within BPHYT_RS20485 at 158.130 kb on - strand, within BPHYT_RS20485 at 158.225 kb on + strand, within BPHYT_RS20485 at 158.225 kb on + strand, within BPHYT_RS20485 at 158.226 kb on - strand, within BPHYT_RS20485 at 158.584 kb on + strand, within BPHYT_RS20485 at 158.584 kb on + strand, within BPHYT_RS20485 at 158.584 kb on + strand, within BPHYT_RS20485 at 159.102 kb on + strand at 159.102 kb on + strand at 159.173 kb on + strand at 159.173 kb on + strand at 159.267 kb on - strand at 159.459 kb on - strand, within BPHYT_RS20490 at 159.486 kb on + strand, within BPHYT_RS20490 at 159.655 kb on - strand, within BPHYT_RS20490 at 159.719 kb on + strand, within BPHYT_RS20490 at 159.720 kb on - strand, within BPHYT_RS20490 at 159.731 kb on + strand, within BPHYT_RS20490 at 159.731 kb on + strand, within BPHYT_RS20490 at 159.731 kb on + strand at 159.732 kb on - strand, within BPHYT_RS20490 at 159.732 kb on - strand, within BPHYT_RS20490 at 159.732 kb on - strand, within BPHYT_RS20490 at 159.732 kb on - strand, within BPHYT_RS20490 at 159.836 kb on + strand, within BPHYT_RS20490 at 159.837 kb on - strand, within BPHYT_RS20490 at 159.927 kb on - strand, within BPHYT_RS20490 at 159.929 kb on + strand, within BPHYT_RS20490 at 159.930 kb on - strand, within BPHYT_RS20490 at 159.934 kb on - strand, within BPHYT_RS20490 at 159.972 kb on - strand, within BPHYT_RS20490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 remove 156,711 + BPHYT_RS20480 0.29 -0.3 156,712 - BPHYT_RS20480 0.29 -0.2 156,861 + BPHYT_RS20480 0.48 +0.2 156,861 + BPHYT_RS20480 0.48 +0.6 156,862 - BPHYT_RS20480 0.48 -0.4 156,862 - BPHYT_RS20480 0.48 -0.5 156,975 + BPHYT_RS20480 0.63 -0.2 156,975 + BPHYT_RS20480 0.63 -0.4 156,982 - BPHYT_RS20480 0.64 -0.5 156,982 - BPHYT_RS20480 0.64 +0.3 156,982 - BPHYT_RS20480 0.64 +1.3 156,982 - BPHYT_RS20480 0.64 +8.6 157,071 + BPHYT_RS20480 0.75 -1.3 157,072 - BPHYT_RS20480 0.76 +0.9 157,134 + BPHYT_RS20480 0.84 +1.1 157,660 + BPHYT_RS20485 0.13 +0.9 157,660 + BPHYT_RS20485 0.13 -0.3 157,707 + BPHYT_RS20485 0.16 +2.2 157,728 - BPHYT_RS20485 0.17 +0.7 157,835 + BPHYT_RS20485 0.24 -1.1 157,835 + BPHYT_RS20485 0.24 +0.5 157,835 + BPHYT_RS20485 0.24 +0.5 157,835 + BPHYT_RS20485 0.24 +0.3 157,952 + BPHYT_RS20485 0.32 -0.8 158,130 - BPHYT_RS20485 0.43 +1.1 158,225 + BPHYT_RS20485 0.49 -0.8 158,225 + BPHYT_RS20485 0.49 -0.5 158,226 - BPHYT_RS20485 0.49 -2.2 158,584 + BPHYT_RS20485 0.73 +0.2 158,584 + BPHYT_RS20485 0.73 +0.1 158,584 + BPHYT_RS20485 0.73 -2.1 159,102 + -0.0 159,102 + -2.6 159,173 + -0.5 159,173 + -1.2 159,267 - -0.8 159,459 - BPHYT_RS20490 0.12 +4.3 159,486 + BPHYT_RS20490 0.14 -1.6 159,655 - BPHYT_RS20490 0.30 -0.2 159,719 + BPHYT_RS20490 0.36 +0.5 159,720 - BPHYT_RS20490 0.36 -0.1 159,731 + BPHYT_RS20490 0.37 +0.5 159,731 + BPHYT_RS20490 0.37 +1.2 159,731 + -0.5 159,732 - BPHYT_RS20490 0.37 -0.7 159,732 - BPHYT_RS20490 0.37 -0.5 159,732 - BPHYT_RS20490 0.37 -0.0 159,732 - BPHYT_RS20490 0.37 +1.6 159,836 + BPHYT_RS20490 0.47 +1.8 159,837 - BPHYT_RS20490 0.47 +0.5 159,927 - BPHYT_RS20490 0.56 +0.2 159,929 + BPHYT_RS20490 0.56 -1.3 159,930 - BPHYT_RS20490 0.56 +0.3 159,934 - BPHYT_RS20490 0.57 +0.4 159,972 - BPHYT_RS20490 0.60 +0.9
Or see this region's nucleotide sequence